`subsetGiottoLocs`¶

Subset by spatial locations

Description¶

Subsets Giotto object based on spatial locations

Usage¶

subsetGiottoLocs(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  spat_loc_name = NULL,
  x_max = NULL,
  x_min = NULL,
  y_max = NULL,
  y_min = NULL,
  z_max = NULL,
  z_min = NULL,
  poly_info = "cell",
  return_gobject = TRUE,
  verbose = FALSE
)

Arguments¶

Argument	Description
`gobject`	giotto object
`spat_unit`	spatial unit
`feat_type`	feature type to use
`spat_loc_name`	name of spatial locations to use
`x_max, x_min, y_max, y_min, z_max, z_min`	minimum and maximum x, y, and z coordinates to subset to
`poly_info`	polygon information to use
`return_gobject`	return Giotto object
`verbose`	be verbose

Details¶

Subsets a Giotto based on spatial locations and for one provided spatial unit: if return_gobject = FALSE, then a filtered combined metadata data.table will be returned

Value¶

giotto object