subsetGiotto

subsetGiotto

Description

Subsets Giotto object including previous analyses.

Usage

subsetGiotto(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  cell_ids = NULL,
  feat_ids = NULL,
  gene_ids = NULL,
  poly_info = NULL,
  x_max = NULL,
  x_min = NULL,
  y_max = NULL,
  y_min = NULL,
  verbose = TRUE,
  toplevel_params = 2
)

Arguments

Argument	Description
gobject	giotto object
spat_unit	spatial unit
feat_type	feature type to use
cell_ids	cell IDs to keep
feat_ids	feature IDs to keep
gene_ids	deprecated, use feat_ids
poly_info	polygon information to use
x_max, x_min, y_max, y_min	minimum and maximum x and y coordinates to keep for feature coordinates
verbose	be verbose
toplevel_params	parameters to extract

Details

Subsets a Giotto object for a specific spatial unit and feature type

Value

giotto object