`addCellStatistics`¶

addCellStatistics

Description¶

adds cells statistics to the giotto object

Usage¶

addCellStatistics(
  gobject,
  feat_type = NULL,
  spat_unit = NULL,
  expression_values = c("normalized", "scaled", "custom"),
  detection_threshold = 0,
  return_gobject = TRUE
)

Arguments¶

Argument	Description
`gobject`	giotto object
`feat_type`	feature type
`spat_unit`	spatial unit
`expression_values`	expression values to use
`detection_threshold`	detection threshold to consider a gene detected
`return_gobject`	boolean: return giotto object (default = TRUE)

Details¶

This function will add the following statistics to cell metadata:

nr_feats: Denotes in how many features are detected per cell
perc_feats: Denotes what percentage of features is detected per cell
total_expr: Shows the total sum of feature expression per cell

Value¶

giotto object if return_gobject = TRUE