GIOTTO SUITE

Multi-Level Spatial Biology Exploration

under construction Giotto Suite is the new and updated version of Giotto.

Giotto Suite is being developed as a suite of software tools, including data structures and methods, for the comprehensive analysis and visualization of spatial multi-omics data at all scales and multiple resolutions. It extends and improves our previous R package Giotto. The underlying framework is generalizable to virtually all current and emerging spatial technologies which may differ in resolution(subcellular, single cell or multiple cells), spatial dimension (2D vs 3D), molecular modality (protein, RNA, DNA, …), and throughput (number of cells and analytes). This will ensure that our spatial analysis solutions remain compatible with all current and future developed spatial technologies and platforms. It will also aid in the further integration with other external analysis pipelines and tools. See NEWS for more details.

Workflow

Click on the images to learn more!

Data Structure

Analysis

More technical information can be found in the detailed workflow section.

References

• Dries, R., Zhu, Q. et al. Giotto, a toolbox for integrative analysis and visualization of spatial expression data. Genome Biology (2021).

• Dries, R., Chen, J., Rossi, N. del, Khan, M.M., Sistig, A., Yuan, G.-C., 2021. Advances in spatial transcriptomic data analysis. Genome Res. 31, 1706–1718

Cite Giotto

Citing Giotto

License

Full License

Community

Code of Conduct

Authors and Developers

Ruben Dries	Author, Maintainer
Jiaji George Chen	Author
Natalie Del Rossi	Author
Emma Kelley	Author
Junxiang Xu	Author
Guo-Cheng Yuan	Author
Joselyn Chávez	Author
Adriana Sistig	Author