joinGiottoObjects

joinGiottoObjects

Description

Function to join multiple giotto objects together

Usage

joinGiottoObjects(
  gobject_list,
  gobject_names = NULL,
  join_method = c("shift", "z_stack"),
  z_vals = 1000,
  x_shift = NULL,
  y_shift = NULL,
  x_padding = 0,
  y_padding = 0,
  verbose = TRUE
)

Arguments

Argument

Description

gobject_list

list of giotto objects

gobject_names

unique giotto names for each giotto object

join_method

method to join giotto objects

z_vals

distance(s) along z-axis if method is z-stack

x_shift

shift along x-axis if method is shift

y_shift

shift along y-axis if method is shift

x_padding

padding between datasets/images if method is shift

y_padding

padding between datasets/images if method is shift

verbose

be verbose

Value

giotto object