`showSpatialCorGenes`¶

showSpatialCorGenes

Description¶

Shows and filters spatially correlated genes

Usage¶

showSpatialCorGenes(
  spatCorObject,
  use_clus_name = NULL,
  selected_clusters = NULL,
  genes = NULL,
  min_spat_cor = 0.5,
  min_expr_cor = NULL,
  min_cor_diff = NULL,
  min_rank_diff = NULL,
  show_top_genes = NULL
)

Arguments¶

Argument	Description
`spatCorObject`	spatial correlation object
`use_clus_name`	cluster information to show
`selected_clusters`	subset of clusters to show
`genes`	subset of genes to show
`min_spat_cor`	filter on minimum spatial correlation
`min_expr_cor`	filter on minimum single-cell expression correlation
`min_cor_diff`	filter on minimum correlation difference (spatial vs expression)
`min_rank_diff`	filter on minimum correlation rank difference (spatial vs expression)
`show_top_genes`	show top genes per gene

Value¶

data.table with filtered information