heatmSpatialCorGenes¶
heatmSpatialCorGenes
Description¶
Create heatmap of spatially correlated genes
Usage¶
heatmSpatialCorGenes(...)
Arguments¶
Argument |
Description |
|---|---|
|
Arguments passed on to ``heatmSpatialCorFeats` <#heatmspatialcorfeats>`_ list(“n”, ” “, list(list(list(“gobject”)), list(“giotto object”)), “n”, ” “, list(list(list(“spatCorObject”)), list(“spatial correlation object”)), “n”, ” “, list(list(list(“use_clus_name”)), list(“name of clusters to visualize (from clusterSpatialCorFeats())”)), “n”, ” “, list(list(list(“show_cluster_annot”)), list(“show cluster annotation on top of heatmap”)), “n”, ” “, list(list(list(“show_row_dend”)), list(“show row dendrogram”)), “n”, ” “, list(list(list(“show_column_dend”)), |
list("show column dendrogram")), "\n", " ", list(list(list("show_row_names")), list("show row names")), "\n", " ", list(list(list("show_column_names")), list("show column names")), "\n", " ", list(list(list("show_plot")), list("show plot")), "\n", " ", list(list(list("return_plot")), list("return ggplot object")), "\n", " ", list(list(list("save_plot")), list("directly save the plot [boolean]")), "\n", " ", list(list(list("save_param")), list("list of saving parameters, see ",
list(list("showSaveParameters")))), "\n", " ", list(list(list("default_save_name")), list("default save name for saving, don't change, change save_name in save_param")), "\n", " ")
Seealso¶
``heatmSpatialCorFeats` <#heatmspatialcorfeats>`_