`rankSpatialCorGroups`¶

rankSpatialCorGroups

Description¶

Rank spatial correlated clusters according to correlation structure

Usage¶

rankSpatialCorGroups(
  gobject,
  spatCorObject,
  use_clus_name = NULL,
  show_plot = NA,
  return_plot = FALSE,
  save_plot = NA,
  save_param = list(),
  default_save_name = "rankSpatialCorGroups"
)

Arguments¶

Argument	Description
`gobject`	giotto object
`spatCorObject`	spatial correlation object
`use_clus_name`	name of clusters to visualize (from clusterSpatialCorGenes())
`show_plot`	show plot
`return_plot`	return ggplot object
`save_plot`	directly save the plot [boolean]
`save_param`	list of saving parameters, see ``showSaveParameters` <#showsaveparameters>`_
`default_save_name`	default save name for saving, don’t change, change save_name in save_param

Value¶

data.table with positive (within group) and negative (outside group) scores