`get_NearestNetwork`¶

Get nearest network

Description¶

Get a NN-network from a Giotto object

Usage¶

get_NearestNetwork(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  nn_network_to_use = NULL,
  network_name = NULL,
  output = c("igraph", "data.table")
)

Arguments¶

Argument	Description
`gobject`	giotto object
`spat_unit`	spatial unit
`feat_type`	feature type
`nn_network_to_use`	kNN or sNN
`network_name`	name of NN network to be used
`output`	return a igraph or data.table object

Value¶

igraph or data.table object

Seealso¶

Other expression space nearest network accessor functions:

``set_NearestNetwork` <#setnearestnetwork>`_

Other functions to get data from giotto object: ``get_dimReduction` <#getdimreduction>`_ , ``get_expression_values` <#getexpressionvalues>`_ , ``get_feature_info` <#getfeatureinfo>`_ , ``get_giottoImage` <#getgiottoimage>`_ , ``get_polygon_info` <#getpolygoninfo>`_ , ``get_spatialGrid` <#getspatialgrid>`_ , ``get_spatialNetwork` <#getspatialnetwork>`_ , ``get_spatial_enrichment` <#getspatialenrichment>`_ , ``get_spatial_locations` <#getspatiallocations>`_

get_NearestNetwork¶