`plotICG`¶

plotICG

Description¶

Create barplot to visualize interaction changed genes

Usage¶

plotICG(
  gobject,
  cpgObject,
  source_type,
  source_markers,
  ICG_genes,
  cell_color_code = NULL,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "plotICG"
)

Arguments¶

Argument	Description
`gobject`	giotto object
`cpgObject`	ICG (interaction changed gene) score object
`source_type`	cell type of the source cell
`source_markers`	markers for the source cell type
`ICG_genes`	named character vector of ICG genes
`cell_color_code`	cell color code for the interacting cell types
`show_plot`	show plots
`return_plot`	return plotting object
`save_plot`	directly save the plot [boolean]
`save_param`	list of saving parameters from ``all_plots_save_function` <#allplotssavefunction>`_
`default_save_name`	default save name for saving, don’t change, change save_name in save_param

Value¶

plot