filterCPG¶
filterCPG
Description¶
Filter Interaction Changed Gene scores.
Usage¶
filterCPG(...)
Arguments¶
Argument |
Description |
|---|---|
|
Arguments passed on to ``filterICG` <#filtericg>`_ list(“n”, ” “, list(list(list(“cpgObject”)), list(“ICG (interaction changed gene) score object”)), “n”, ” “, list(list(list(“min_cells”)), list(“minimum number of source cell type”)), “n”, ” “, list(list(list(“min_cells_expr”)), list(“minimum expression level for source cell type”)), “n”, ” “, list(list(list(“min_int_cells”)), list(“minimum number of interacting neighbor cell type”)), “n”, ” “, list(list(list(“min_int_cells_expr”)), list(“minimum expression level for interacting neighbor cell type”)), |
"\n", " ", list(list(list("min_fdr")), list("minimum adjusted p-value")), "\n", " ", list(list(list("min_spat_diff")), list("minimum absolute spatial expression difference")), "\n", " ", list(list(list("min_log2_fc")), list("minimum log2 fold-change")), "\n", " ", list(list(list("min_zscore")), list("minimum z-score change")), "\n", " ", list(list(list("zscores_column")), list("calculate z-scores over cell types or genes")), "\n", " ", list(list(list("direction")), list("differential expression directions to keep")),
"\n", " ")
Seealso¶
``filterICG` <#filtericg>`_