`plotCombineICG`¶

plotCombineICG

Description¶

Create visualization for combined (pairwise) ICG scores

Usage¶

plotCombineICG(
  gobject,
  combCpgObject,
  selected_interactions = NULL,
  selected_gene_to_gene = NULL,
  detail_plot = T,
  simple_plot = F,
  simple_plot_facet = c("interaction", "genes"),
  facet_scales = "fixed",
  facet_ncol = length(selected_gene_to_gene),
  facet_nrow = length(selected_interactions),
  colors = c("#9932CC", "#FF8C00"),
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "plotCombineICG"
)

Arguments¶

Argument	Description
`gobject`	giotto object
`combCpgObject`	ICGscores, output from combineInteractionChangedGenes()
`selected_interactions`	interactions to show
`selected_gene_to_gene`	pairwise gene combinations to show
`detail_plot`	show detailed info in both interacting cell types
`simple_plot`	show a simplified plot
`simple_plot_facet`	facet on interactions or genes with simple plot
`facet_scales`	ggplot facet scales paramter
`facet_ncol`	ggplot facet ncol parameter
`facet_nrow`	ggplot facet nrow parameter
`colors`	vector with two colors to use
`show_plot`	show plots
`return_plot`	return plotting object
`save_plot`	directly save the plot [boolean]
`save_param`	list of saving parameters from ``all_plots_save_function` <#allplotssavefunction>`_
`default_save_name`	default save name for saving, don’t change, change save_name in save_param

Value¶

ggplot