`plotRecovery`¶

plotRecovery

Description¶

Plots recovery plot to compare ligand-receptor rankings from spatial and expression information

Usage¶

plotRecovery(
  gobject,
  combCC,
  expr_rnk_column = "exprPI_rnk",
  spat_rnk_column = "spatPI_rnk",
  ground_truth = c("spatial", "expression"),
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "plotRecovery"
)

Arguments¶

Argument	Description
`gobject`	giotto object
`combCC`	combined communinication scores from ``combCCcom` <#combcccom>`_
`expr_rnk_column`	column with expression rank information to use
`spat_rnk_column`	column with spatial rank information to use
`ground_truth`	what to consider as ground truth (default: spatial)
`show_plot`	show plots
`return_plot`	return plotting object
`save_plot`	directly save the plot [boolean]
`save_param`	list of saving parameters from ``all_plots_save_function` <#allplotssavefunction>`_
`default_save_name`	default save name for saving, don’t change, change save_name in save_param

Value¶

ggplot