plotGiottoImage

Plot a giotto image object

Description

Display a giotto image in the viewer panel. Image object to plot

can be specified by providing the giotto object containing the image ( gobject ), the image object name ( image_name ), and the image object type ( image_type ). Alternatively, image objects can be directly plotted through their respective associated params.

Usage

plotGiottoImage(
  gobject = NULL,
  image_name = NULL,
  image_type = NULL,
  giottoImage = NULL,
  giottoLargeImage = NULL,
  largeImage_crop_params_list = NULL,
  largeImage_max_intensity = NULL,
  ...
)

Arguments

Argument

Description

gobject

gobject containing giotto image object

image_name

name of giotto image object

image_type

type of giotto image object to plot

giottoImage

giottoImage object to plot directly

giottoLargeImage

giottoLargeImage object to plot directly

largeImage_crop_params_list

(optional) named list of params for focusing on a specified region of a giottoLargeImage.

largeImage_max_intensity

(optional) assign override value to treat as maximum intensity in color scale when plotting giottoLargeImage

...

additional params to pass to image object specific plotting functions

Seealso

Other basic image functions:

``addGiottoImage` <#addgiottoimage>`_ , ``reconnectGiottoImage` <#reconnectgiottoimage>`_ , ``updateGiottoImage` <#updategiottoimage>`_