makeSignMatrixRank

makeSignMatrixRank

Description

Function to convert a single-cell count matrix

and a corresponding single-cell cluster vector into a rank matrix that can be used with the Rank enrichment option.

Usage

makeSignMatrixRank(
  sc_matrix,
  sc_cluster_ids,
  ties_method = c("random", "max"),
  gobject = NULL
)

Arguments

Argument	Description
sc_matrix	matrix of single-cell RNAseq expression data
sc_cluster_ids	vector of cluster ids
ties_method	how to handle rank ties
gobject	if giotto object is given then only genes present in both datasets will be considered

Value

matrix

Seealso

``rankEnrich` <#rankenrich>`_