crossSectionGenePlot

crossSectionGenePlot

Description

Visualize cells and gene expression in a virtual cross section according to spatial coordinates

Usage

crossSectionGenePlot(
  gobject = NULL,
  spat_loc_name = "raw",
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  default_save_name = "crossSectionGenePlot",
  ...
)

Arguments

Argument

Description

gobject

giotto object

spat_loc_name

name of spatial locations

crossSection_obj

crossSection object

name

name of virtual cross section to use

spatial_network_name

name of spatial network to use

default_save_name

default save name for saving, don’t change, change save_name in save_param

...

parameters for spatGenePlot2D

Details

Description of parameters.

Value

ggplot

Seealso

``spatGenePlot3D` <#spatgeneplot3d>`_ and ``spatGenePlot2D` <#spatgeneplot2d>`_