`crossSectionGenePlot`¶

crossSectionGenePlot

Description¶

Visualize cells and gene expression in a virtual cross section according to spatial coordinates

Usage¶

crossSectionGenePlot(
  gobject = NULL,
  spat_loc_name = "raw",
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  default_save_name = "crossSectionGenePlot",
  ...
)

Arguments¶

Argument	Description
`gobject`	giotto object
`spat_loc_name`	name of spatial locations
`crossSection_obj`	crossSection object
`name`	name of virtual cross section to use
`spatial_network_name`	name of spatial network to use
`default_save_name`	default save name for saving, don’t change, change save_name in save_param
`...`	parameters for spatGenePlot2D

Details¶

Description of parameters.

Value¶

ggplot

Seealso¶

``spatGenePlot3D` <#spatgeneplot3d>`_ and ``spatGenePlot2D` <#spatgeneplot2d>`_