`cellProximityBarplot`¶

cellProximityBarplot

Description¶

Create barplot from cell-cell proximity scores

Usage¶

cellProximityBarplot(
  gobject,
  CPscore,
  min_orig_ints = 5,
  min_sim_ints = 5,
  p_val = 0.05,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "cellProximityBarplot"
)

Arguments¶

Argument	Description
`gobject`	giotto object
`CPscore`	CPscore, output from cellProximityEnrichment()
`min_orig_ints`	filter on minimum original cell-cell interactions
`min_sim_ints`	filter on minimum simulated cell-cell interactions
`p_val`	p-value
`show_plot`	show plot
`return_plot`	return ggplot object
`save_plot`	directly save the plot [boolean]
`save_param`	list of saving parameters from ``all_plots_save_function` <#allplotssavefunction>`_
`default_save_name`	default save name for saving, don’t change, change save_name in save_param

Details¶

This function creates a barplot that shows the spatial proximity: enrichment or depletion of cell type pairs.

Value¶

ggplot barplot