`plotStatDelaunayNetwork`¶

plotStatDelaunayNetwork

Description¶

Plots network statistics for a Delaunay network..

Usage¶

plotStatDelaunayNetwork(
  gobject,
  method = c("deldir", "delaunayn_geometry", "RTriangle"),
  dimensions = "all",
  maximum_distance = "auto",
  minimum_k = 0,
  options = "Pp",
  Y = TRUE,
  j = TRUE,
  S = 0,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "plotStatDelaunayNetwork",
  ...
)

Arguments¶

Argument	Description
`gobject`	giotto object
`method`	package to use to create a Delaunay network
`dimensions`	which spatial dimensions to use (maximum 2 dimensions)
`maximum_distance`	distance cuttof for Delaunay neighbors to consider
`minimum_k`	minimum neigbhours if maximum_distance != NULL
`options`	(geometry) String containing extra control options for the underlying Qhull command; see the Qhull documentation (../doc/qhull/html/qdelaun.html) for the available options. (default = ‘Pp’, do not report precision problems)
`Y`	(RTriangle) If TRUE prohibits the insertion of Steiner points on the mesh boundary.
`j`	(RTriangle) If TRUE jettisons vertices that are not part of the final triangulation from the output.
`S`	(RTriangle) Specifies the maximum number of added Steiner points.
`show_plot`	show plots
`return_plot`	return ggplot object
`save_plot`	directly save the plot [boolean]
`save_param`	list of saving parameters, see ``showSaveParameters` <#showsaveparameters>`_
`default_save_name`	default save name for saving, don’t change, change save_name in save_param
`list()`	Other parameters

Value¶

giotto object with updated spatial network slot