addStatistics

addStatistics

Description

adds genes and cells statistics to the giotto object

Usage

addStatistics(
  gobject,
  expression_values = c("normalized", "scaled", "custom"),
  detection_threshold = 0,
  return_gobject = TRUE
)

Arguments

Argument	Description
gobject	giotto object
expression_values	expression values to use
detection_threshold	detection threshold to consider a gene detected
return_gobject	boolean: return giotto object (default = TRUE)

Details

See ``addGeneStatistics` <#addgenestatistics>`_ and ``addCellStatistics` <#addcellstatistics>`_

Value

giotto object if return_gobject = TRUE, else a list with results

Examples

data(mini_giotto_single_cell)

updated_giotto_object = addStatistics(mini_giotto_single_cell)