subsetGiottoLocs

subsetGiottoLocs

Description

subsets Giotto object based on spatial locations

Usage

subsetGiottoLocs(
  gobject,
  x_max = NULL,
  x_min = NULL,
  y_max = NULL,
  y_min = NULL,
  z_max = NULL,
  z_min = NULL,
  return_gobject = T,
  verbose = FALSE
)

Arguments

Argument	Description
gobject	giotto object
x_max	maximum x-coordinate
x_min	minimum x-coordinate
y_max	maximum y-coordinate
y_min	minimum y-coordinate
z_max	maximum z-coordinate
z_min	minimum z-coordinate
return_gobject	return Giotto object
verbose	be verbose

Details

if return_gobject = FALSE, then a filtered combined metadata data.table will be returned

Value

giotto object

Examples

list("\n", "\n", "data(mini_giotto_single_cell)\n", "\n", "# spatial plot\n", "spatPlot(mini_giotto_single_cell)\n", "\n", "# subset giotto object based on spatial locations\n", "subset_obj = subsetGiottoLocs(mini_giotto_single_cell,\n", "x_max = 1500, x_min = 1000,\n", "y_max = -500, y_min = -1000)\n", "\n", "# spatial plot of subset giotto object\n", "spatPlot(subset_obj)\n", "\n")