`simulateOneGenePatternGiottoObject`¶

simulateOneGenePatternGiottoObject

Description¶

Create a simulated spatial pattern for one selected gnee

Usage¶

simulateOneGenePatternGiottoObject(
  gobject,
  pattern_name = "pattern",
  pattern_cell_ids = NULL,
  gene_name = NULL,
  spatial_prob = 0.95,
  gradient_direction = NULL,
  show_pattern = TRUE,
  pattern_colors = c(`in` = "green", out = "red"),
  ...
)

Arguments¶

Argument	Description
`gobject`	giotto object
`pattern_name`	name of spatial pattern
`pattern_cell_ids`	cell ids that make up the spatial pattern
`gene_name`	selected gene
`spatial_prob`	probability for a high expressing gene value to be part of the spatial pattern
`gradient_direction`	direction of gradient
`show_pattern`	show the discrete spatial pattern
`pattern_colors`	2 color vector for the spatial pattern
`list()`	additional parameters for (re-)normalizing

Value¶

Reprocessed Giotto object for which one gene has a forced spatial pattern