`plotCCcomDotplot`¶

plotCCcomDotplot

Description¶

Plots dotplot for ligand-receptor communication scores in cell-cell interactions

Usage¶

plotCCcomDotplot(
  gobject,
  comScores,
  selected_LR = NULL,
  selected_cell_LR = NULL,
  show_LR_names = TRUE,
  show_cell_LR_names = TRUE,
  cluster_on = c("PI", "LR_expr", "log2fc"),
  cor_method = c("pearson", "kendall", "spearman"),
  aggl_method = c("ward.D", "ward.D2", "single", "complete", "average", "mcquitty",
    "median", "centroid"),
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "plotCCcomDotplot"
)

Arguments¶

Argument	Description
`gobject`	giotto object
`comScores`	communinication scores from ``exprCellCellcom` <#exprcellcellcom>`_ or ``spatCellCellcom` <#spatcellcellcom>`_
`selected_LR`	selected ligand-receptor combinations
`selected_cell_LR`	selected cell-cell combinations for ligand-receptor combinations
`show_LR_names`	show ligand-receptor names
`show_cell_LR_names`	show cell-cell names
`cluster_on`	values to use for clustering of cell-cell and ligand-receptor pairs
`cor_method`	correlation method used for clustering
`aggl_method`	agglomeration method used by hclust
`show_plot`	show plots
`return_plot`	return plotting object
`save_plot`	directly save the plot [boolean]
`save_param`	list of saving parameters from ``all_plots_save_function` <#allplotssavefunction>`_
`default_save_name`	default save name for saving, don’t change, change save_name in save_param

Value¶

ggplot