makeSignMatrixRank
¶
makeSignMatrixRank
Description¶
- Function to convert a single-cell count matrix
and a corresponding single-cell cluster vector into a rank matrix that can be used with the Rank enrichment option.
Usage¶
makeSignMatrixRank(
sc_matrix,
sc_cluster_ids,
ties_method = c("random", "max"),
gobject = NULL
)
Arguments¶
Argument |
Description |
---|---|
|
matrix of single-cell RNAseq expression data |
|
vector of cluster ids |
|
how to handle rank ties |
|
if giotto object is given then only genes present in both datasets will be considered |
Value¶
matrix
Seealso¶
``rankEnrich` <#rankenrich>`_