`heatmSpatialCorGenes`¶

heatmSpatialCorGenes

Description¶

Create heatmap of spatially correlated genes

Usage¶

heatmSpatialCorGenes(
  gobject,
  spatCorObject,
  use_clus_name = NULL,
  show_cluster_annot = TRUE,
  show_row_dend = T,
  show_column_dend = F,
  show_row_names = F,
  show_column_names = F,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "heatmSpatialCorGenes",
  ...
)

Arguments¶

Argument	Description
`gobject`	giotto object
`spatCorObject`	spatial correlation object
`use_clus_name`	name of clusters to visualize (from clusterSpatialCorGenes())
`show_cluster_annot`	show cluster annotation on top of heatmap
`show_row_dend`	show row dendrogram
`show_column_dend`	show column dendrogram
`show_row_names`	show row names
`show_column_names`	show column names
`show_plot`	show plot
`return_plot`	return ggplot object
`save_plot`	directly save the plot [boolean]
`save_param`	list of saving parameters, see ``showSaveParameters` <#showsaveparameters>`_
`default_save_name`	default save name for saving, don’t change, change save_name in save_param
`list()`	additional parameters to the ``Heatmap` <#heatmap>`_ function from ComplexHeatmap

Value¶

Heatmap generated by ComplexHeatmap