`findNetworkNeighbors`¶

findNetworkNeighbors

Description¶

Find the spatial neighbors for a selected group of cells within the selected spatial network.

Usage¶

findNetworkNeighbors(
  gobject,
  spatial_network_name,
  source_cell_ids = NULL,
  name = "nb_cells"
)

Arguments¶

Argument	Description
`gobject`	Giotto object
`spatial_network_name`	name of spatial network
`source_cell_ids`	cell ids for which you want to know the spatial neighbors
`name`	name of the results

Value¶

data.table

Examples¶

data(mini_giotto_single_cell)

# get all cells
all_cells = slot(mini_giotto_single_cell, 'cell_ID')

# find all the spatial neighbours for the first 5 cells
# within the Delaunay network
findNetworkNeighbors(mini_giotto_single_cell,
spatial_network_name = 'Delaunay_network',
source_cell_ids = all_cells[1:5])