anndataToGiotto

anndataToGiotto

Description

Converts a spatial anndata (e.g. scanpy) .h5ad file into a Giotto object

Usage

anndataToGiotto(
  anndata_path,
  metadata_cols = c("total_counts", "pct_counts_mt"),
  instructions = NULL,
  ...
)

Arguments

Argument	Description
anndata_path	path to the .h5ad file
metadata_cols	metadata columns to include
instructions	giotto instructions
list()	additional parameters to ``createGiottoObject` <#creategiottoobject>`_

Details

Function in beta. Converts a .h5ad file into a Giotto object.

Value

Giotto object